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Package: camalienr 0.6.0

Lars Dalby

camalienr: Functions Used in the Plant Module of the Biodiversa+ Pilot on Invasive Alien Species

Tools used in the work with the vehicle mounted CamAlien system for monitoring plants. The package provides functions to interact with the CamAlien database.

Authors:Lars Dalby [aut, cre]

camalienr_0.6.0.tar.gz
camalienr_0.6.0.zip(r-4.7-any)camalienr_0.6.0.zip(r-4.6-any)camalienr_0.6.0.zip(r-4.5-any)
camalienr_0.6.0.tgz(r-4.6-any)camalienr_0.6.0.tgz(r-4.5-any)
camalienr_0.6.0.tar.gz(r-4.7-any)camalienr_0.6.0.tar.gz(r-4.6-any)
camalienr_0.6.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
camalienr/json (API)

# Install 'camalienr' in R:

install.packages('camalienr', repos = c('https://ldalby.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://gitlab.au.dk/ecos/biodiversa/camalien/camalienr

Datasets:

ias - List of target species for all partners
images - Extract of detections and image metadata
partners - List of partners and their acronyms

On CRAN:

1.70 score 32 exports 43 dependencies

Last updated from:99d412910f. Checks:7 NOTE, 2 OK. Indexed: no.

Target	Result	Time
linux-devel	NOTE	134
source / vignettes	OK	234
linux-release	NOTE	163
macos-release	NOTE	93
macos-oldrel	NOTE	120
windows-devel	NOTE	78
windows-release	NOTE	71
windows-oldrel	NOTE	79
wasm-release	OK	141

Exports:ca_as_sf ca_connect ca_disconnect ca_get_additionalimagedata ca_get_chunk ca_get_detection ca_get_detectionsummary ca_get_image ca_get_imagedata ca_get_imagefile ca_get_imagemeta ca_get_job ca_get_join_tbl ca_get_partner ca_get_plantnetcall ca_get_polygon ca_get_session ca_get_session_tbl ca_get_species ca_get_tbl ca_image_model ca_img_detection ca_img_draw_polygon ca_img_grid ca_img_plot ca_img_read ca_json_read ca_parse_chunks ca_parse_job ca_stat_images ca_stat_jobsize ca_stat_tagged

Dependencies:bit bit64 blob class classInt cli cpp11 curl DBI dbplyr dplyr e1071 fs generics glue hms jsonlite KernSmooth lifecycle lubridate magick magrittr pillar pkgconfig proxy purrr R6 Rcpp rlang RPostgres s2 sf stringi stringr tibble tidyr tidyselect timechange units utf8 vctrs withr wk

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Convert data.frame to Simple Feature collection	ca_as_sf
Connect to the camalien database	ca_connect
Disconnect from the database	ca_disconnect
Get tables from the camalien database	ca_get_additionalimagedata ca_get_chunk ca_get_detection ca_get_detectionsummary ca_get_image ca_get_imagedata ca_get_imagefile ca_get_imagemeta ca_get_job ca_get_partner ca_get_plantnetcall ca_get_session ca_get_species
Create and return a table for filtering rows to a partner	ca_get_join_tbl
Extract polygon information from Plantnet response	ca_get_polygon
Create and return a session table for filtering rows to a partner	ca_get_session_tbl
Get a table from the camalien database	ca_get_tbl
Which image model does this connection carry?	ca_image_model
Plot image and polygon with detection	ca_img_detection
Draw polygons on top of images	ca_img_draw_polygon
Plot grid of images	ca_img_grid
Plot image	ca_img_plot
Read image from URL	ca_img_read
Read state files from CamAlien uploader	ca_json_read
Parse json files with info on chunks	ca_parse_chunks
Parse json files with info on the job	ca_parse_job
Get statistics on images	ca_stat_images
Get statistics on upload jobs	ca_stat_jobsize
Get statistics on tagged images	ca_stat_tagged
List of target species for all partners	ias
Draw an ID box on an image	id_box
Extract of detections and image metadata	images
List of partners and their acronyms	partners