{
  "_id": "6a2e602c3efcd9bda430eca0",
  "Package": "camalienr",
  "Title": "Functions Used in the Plant Module of the Biodiversa+ Pilot on\nInvasive Alien Species",
  "Version": "0.4.2",
  "Authors@R": "person(\"Lars\", \"Dalby\", , \"lars.dalby@ecos.au.dk\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-7270-6999\"))",
  "Description": "Tools used in the work with the vehicle mounted CamAlien\nsystem for monitoring plants. The package provides functions to\ninteract with the CamAlien database.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "URL": "https://camalienr.z16.web.core.windows.net",
  "BugReports": "https://gitlab.au.dk/ecos/biodiversa/camalien/camalienr/-/issues",
  "Config/Needs/website": "rmarkdown, ggplot2, ggridges, mapview",
  "LazyData": "true",
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nmake libmagick++-dev gsfonts libicu-dev libuv1-dev libssl-dev\nlibpq-dev libproj-dev libsqlite3-dev libudunits2-dev",
  "Repository": "https://ldalby.r-universe.dev",
  "Date/Publication": "2025-05-02 09:24:40 UTC",
  "RemoteUrl": "https://gitlab.au.dk/ecos/biodiversa/camalien/camalienr",
  "RemoteRef": "HEAD",
  "RemoteSha": "d5bbe3e002432880571273bb7773d65b201904e8",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-14 07:59:46 UTC",
    "User": "root"
  },
  "Author": "Lars Dalby [aut, cre] (ORCID: <https://orcid.org/0000-0002-7270-6999>)",
  "Maintainer": "Lars Dalby <lars.dalby@ecos.au.dk>",
  "MD5sum": "13cd3609ea8f21437e46e1543e557765",
  "_user": "ldalby",
  "_type": "src",
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  "_published": "2026-06-14T08:02:52.065Z",
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  "_buildurl": "https://github.com/r-universe/ldalby/actions/runs/27492542616",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://gitlab.au.dk/ecos/biodiversa/camalien/camalienr",
  "_commit": {
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    "author": "Lars Dalby <lars@bios.au.dk>",
    "committer": "Lars Dalby <lars@bios.au.dk>",
    "message": "Merge branch 'development' into 'main'\n\nDevelopment\n\nSee merge request ecos/biodiversa/camalien/camalienr!20",
    "time": 1746177880
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  "_maintainer": {
    "name": "Lars Dalby",
    "email": "lars.dalby@ecos.au.dk",
    "orcid": "0000-0002-7270-6999"
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  "_dependencies": [
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      "role": "Imports"
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    },
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  "_owner": "gitlab-camalien",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_userbio": {
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    "type": "user",
    "name": "Lars Dalby",
    "followers": 6,
    "description": "Data scientist, ecologist, PhD.\r\n\r\n"
  },
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/camalienr"
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  "_pkgdown": "https://camalienr.z16.web.core.windows.net",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
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  "_cranurl": false,
  "_exports": [
    "ca_as_sf",
    "ca_connect",
    "ca_disconnect",
    "ca_get_chunk",
    "ca_get_detection",
    "ca_get_detectionsummary",
    "ca_get_image",
    "ca_get_imagemeta",
    "ca_get_job",
    "ca_get_join_tbl",
    "ca_get_partner",
    "ca_get_plantnetcall",
    "ca_get_polygon",
    "ca_get_species",
    "ca_img_detection",
    "ca_img_draw_polygon",
    "ca_img_grid",
    "ca_img_plot",
    "ca_img_read",
    "ca_json_read",
    "ca_parse_chunks",
    "ca_parse_job",
    "ca_stat_images",
    "ca_stat_jobsize",
    "ca_stat_tagged"
  ],
  "_datasets": [
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      "name": "ias",
      "title": "List of target species for all partners",
      "object": "ias",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "partner",
        "canonical_name",
        "scientificname",
        "gbifid",
        "pnid",
        "taxon_name_key",
        "taxonomic_rank"
      ],
      "rows": 211,
      "table": true,
      "tojson": true
    },
    {
      "name": "images",
      "title": "Extract of detections and image metadata",
      "object": "images",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "callid",
        "score",
        "boxsize",
        "centerx",
        "centery",
        "speciesid",
        "imageid",
        "imageurl"
      ],
      "rows": 5,
      "table": true,
      "tojson": true
    },
    {
      "name": "partners",
      "title": "List of partners and their acronyms",
      "object": "partners",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "partner",
        "partner_acronym"
      ],
      "rows": 11,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "ca_as_sf",
      "title": "Convert data.frame to Simple Feature collection",
      "topics": [
        "ca_as_sf"
      ]
    },
    {
      "page": "ca_connect",
      "title": "Connect to the camalien database",
      "topics": [
        "ca_connect"
      ]
    },
    {
      "page": "ca_disconnect",
      "title": "Disconnect from the database",
      "topics": [
        "ca_disconnect"
      ]
    },
    {
      "page": "ca_get_image",
      "title": "Get tables from the camalien database",
      "topics": [
        "ca_get_chunk",
        "ca_get_detection",
        "ca_get_detectionsummary",
        "ca_get_image",
        "ca_get_imagemeta",
        "ca_get_job",
        "ca_get_partner",
        "ca_get_plantnetcall",
        "ca_get_species"
      ]
    },
    {
      "page": "ca_get_join_tbl",
      "title": "Create and return a table for filtering rows to a partner",
      "topics": [
        "ca_get_join_tbl"
      ]
    },
    {
      "page": "ca_get_polygon",
      "title": "Extract polygon information from Plantnet response",
      "topics": [
        "ca_get_polygon"
      ]
    },
    {
      "page": "ca_img_detection",
      "title": "Plot image and polygon with detection",
      "topics": [
        "ca_img_detection"
      ]
    },
    {
      "page": "ca_img_draw_polygon",
      "title": "Draw polygons on top of images",
      "topics": [
        "ca_img_draw_polygon"
      ]
    },
    {
      "page": "ca_img_grid",
      "title": "Plot grid of images",
      "topics": [
        "ca_img_grid"
      ]
    },
    {
      "page": "ca_img_plot",
      "title": "Plot image",
      "topics": [
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      ]
    },
    {
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      "title": "Read image from URL",
      "topics": [
        "ca_img_read"
      ]
    },
    {
      "page": "ca_json_read",
      "title": "Read state files from CamAlien uploader",
      "topics": [
        "ca_json_read"
      ]
    },
    {
      "page": "ca_parse_chunks",
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      "topics": [
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      ]
    },
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    },
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      ]
    },
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      "topics": [
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      ]
    },
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      ]
    },
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      "page": "ias",
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      "topics": [
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      ]
    },
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      "title": "Draw an ID box on an image",
      "topics": [
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      ]
    },
    {
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      "title": "Extract of detections and image metadata",
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      ]
    },
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