{ "_id": "6a197e59acfb0bcc41df767a", "Package": "naturdata", "Title": "Tools For Working With Naturdata_kalo", "Version": "0.4.16", "Authors@R": "person(\"Lars\", \"Dalby\", , \"lars.dalby@ecos.au.dk\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-7270-6999\"))", "Description": "This R package provides tools for working with the\nnaturdata_kalo database", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "LazyData": "true", "Config/pak/sysreqs": "make libicu-dev unixodbc-dev", "Repository": "https://ldalby.r-universe.dev", "Date/Publication": "2025-03-13 13:03:15 UTC", "RemoteUrl": "https://gitlab.au.dk/ecos/tools/r-pkgs/naturdata", "RemoteRef": "HEAD", "RemoteSha": "7eb6030d7ec66cf428ef0a3c3b169ede3f3d0c6f", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 11:05:31 UTC", "User": "root" }, "Author": "Lars Dalby [aut, cre] (ORCID: )", "Maintainer": "Lars Dalby ", "MD5sum": "3ed7e2979c903ee47751f6be44a1d7d6", "_user": "ldalby", "_type": "src", "_file": "naturdata_0.4.16.tar.gz", "_fileid": "56eecbb8063b549217b32ba7f051cc400516096e34d0bb69262fc20fd80af083", "_filesize": 245117, "_sha256": "56eecbb8063b549217b32ba7f051cc400516096e34d0bb69262fc20fd80af083", "_created": "2026-05-29T11:05:31.000Z", "_published": "2026-05-29T11:54:01.098Z", "_distro": "noble", "_jobs": [ { "job": 78488599971, "time": 142, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7289240511" }, { "job": 78488599995, "time": 129, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7289236938" }, { "job": 78488600022, "time": 134, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7289990312" }, { "job": 78488600161, "time": 117, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7290021479" }, { "job": 78488155077, "time": 187, "config": "source", "r": "4.6.0", "check": "OK", 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Dalby", "email": "lars.dalby@ecos.au.dk", "orcid": "0000-0002-7270-6999" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "cli", "role": "Imports" }, { "package": "DBI", "role": "Imports" }, { "package": "dbplyr", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "glue", "role": "Imports" }, { "package": "lubridate", "role": "Imports" }, { "package": "odbc", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "RSQLite", "role": "Imports" }, { "package": "stringi", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "wk", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "gitlab-r-pkgs", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_userbio": { "uuid": 2366579, "type": "user", "name": "Lars Dalby", "description": "Data scientist, ecologist, PhD.\r\n\r\n" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/naturdata" }, "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/naturdata.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "ndb_aggregate_pinpoint", "ndb_append_coords", "ndb_calc_avg", "ndb_calc_cover_ratio", "ndb_calc_jord_cn", "ndb_calc_n_arter", "ndb_calc_n_store_stammer", "ndb_calc_weighted_assessment", "ndb_clean_artsliste", "ndb_clean_kemi", "ndb_clean_lysaaben_struktur", "ndb_clean_plantekemi", "ndb_clean_skov_doedtved", "ndb_clean_skov_struktur", "ndb_clean_stamdata", "ndb_connect", "ndb_create_tbl", "ndb_disconnect", "ndb_filter_artsliste", "ndb_filter_lysaaben_prog", "ndb_filter_skov_prog", "ndb_get", "ndb_get_artsliste_pf", "ndb_get_artsnavne", "ndb_get_artsscorer", "ndb_get_arttraits", "ndb_get_doedtved", "ndb_get_ellenberg", "ndb_get_laver", "ndb_get_lysaaben_struktur", "ndb_get_mosser", "ndb_get_novana_aktids", "ndb_get_plantekemi", "ndb_get_schema", "ndb_get_skov_struktur", "ndb_get_skov_trae_diam_naturtype", "ndb_get_skov_traeregistrering", "ndb_get_stamdata", "ndb_get_tbl", "ndb_label", "ndb_rename", "ndb_to_percent", "ndb_update_import_job", "ndb_write_artsliste", "ndb_write_to_db" ], "_datasets": [ { "name": "ndb_labels", "title": "Naturdata_kalo labels", "object": "ndb_labels", "class": [ "character" ], "fields": [], "table": false, "tojson": true }, { "name": "ndb_names", "title": "Naturdata_kalo names", "object": "ndb_names", "class": [ "character" ], "fields": [], "table": false, "tojson": true }, { "name": "nogo_naturtyper", "title": "No-go naturtyper", "object": "nogo_naturtyper", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "get_condition", "title": "Generate a condition string", "topics": [ "get_condition" ] }, { "page": "ndb_aggregate_pinpoint", "title": "Calculate number of pins hit by an aggregated species group", "topics": [ "ndb_aggregate_pinpoint" ] }, { "page": "ndb_append_coords", "title": "Extract x and y from WKT", "topics": [ "ndb_append_coords" ] }, { "page": "ndb_calc_avg", "title": "Calculate the average across multiple columns", "topics": [ "ndb_calc_avg" ] }, { "page": "ndb_calc_cover_ratio", "title": "Calculate the cover ratio", "topics": [ "ndb_calc_cover_ratio" ] }, { "page": "ndb_calc_jord_cn", "title": "Calculate jord_CN", "topics": [ "ndb_calc_jord_cn" ] }, { "page": "ndb_calc_n_arter", "title": "Calculate the number of unique species observations", "topics": [ "ndb_calc_n_arter" ] }, { "page": "ndb_calc_n_store_stammer", "title": "Calculate the number of large trunks", "topics": [ "ndb_calc_n_store_stammer" ] }, { "page": "ndb_calc_weighted_assessment", "title": "Calculate an area weighted assessment", "topics": [ "ndb_calc_weighted_assessment" ] }, { "page": "ndb_clean_artsliste", "title": "Function to clean the artsliste table", "topics": [ "ndb_clean_artsliste" ] }, { "page": "ndb_clean_kemi", "title": "Function to clean the raw.kemi table", "topics": [ "ndb_clean_kemi" ] }, { "page": "ndb_clean_lysaaben_struktur", "title": "Function to clean the raw.lysaaben_struktur table", "topics": [ "ndb_clean_lysaaben_struktur" ] }, { "page": "ndb_clean_plantekemi", "title": "Function to clean the plantekemi table", "topics": [ "ndb_clean_plantekemi" ] }, { "page": "ndb_clean_skov_doedtved", "title": "Function to clean the skov_doedtved table", "topics": [ "ndb_clean_skov_doedtved" ] }, { "page": "ndb_clean_skov_struktur", "title": "Function to clean the skov_struktur table", "topics": [ "ndb_clean_skov_struktur" ] }, { "page": "ndb_clean_stamdata", "title": "Function to clean the raw.stamdata table", "topics": [ "ndb_clean_stamdata" ] }, { "page": "ndb_connect", "title": "Connect to naturdata_kalo", "topics": [ "ndb_connect" ] }, { "page": "ndb_create_tbl", "title": "Create and write table", "topics": [ "ndb_create_tbl" ] }, { "page": "ndb_disconnect", "title": "Disconnect from database", "topics": [ "ndb_disconnect" ] }, { "page": "ndb_filter_artsliste", "title": "Filter the artsliste table", "topics": [ "ndb_filter_artsliste" ] }, { "page": "ndb_filter_lysaaben_prog", "title": "Filter to only program IDs for lysåben", "topics": [ "ndb_filter_lysaaben_prog" ] }, { "page": "ndb_filter_skov_prog", "title": "Filter to only skov programs", "topics": [ "ndb_filter_skov_prog" ] }, { "page": "ndb_get", "title": "Get a specified table from the database", "topics": [ "ndb_get" ] }, { "page": "ndb_get_artsgruppe", "title": "Get the artsgruppe_planter table", "topics": [ "ndb_get_artsgruppe" ] }, { "page": "ndb_get_artsliste_pf", "title": "Get the artsliste table", "topics": [ "ndb_get_artsliste_pf" ] }, { "page": "ndb_get_artsnavne", "title": "Get the list of species names", "topics": [ "ndb_get_artsnavne" ] }, { "page": "ndb_get_artsscorer", "title": "Get the list of artsscorer per species", "topics": [ "ndb_get_artsscorer" ] }, { "page": "ndb_get_arttraits", "title": "Get the list of traits", "topics": [ "ndb_get_arttraits" ] }, { "page": "ndb_get_doedtved", "title": "Get the skov doedtved table", "topics": [ "ndb_get_doedtved" ] }, { "page": "ndb_get_ellenberg", "title": "Get the Ellenberg values", "topics": [ "ndb_get_ellenberg" ] }, { "page": "ndb_get_laver", "title": "Get the list of lichen species names", "topics": [ "ndb_get_laver" ] }, { "page": "ndb_get_lysaaben_struktur", "title": "Get the lysaaben struktur table", "topics": [ "ndb_get_lysaaben_struktur" ] }, { "page": "ndb_get_mosser", "title": "Get the artsnavne table only of bryophytes", "topics": [ "ndb_get_mosser" ] }, { "page": "ndb_get_novana_aktids", "title": "Get the list of aktId's from NOVANA", "topics": [ "ndb_get_novana_aktids" ] }, { "page": "ndb_get_plantekemi", "title": "Get the plantekemi table", "topics": [ "ndb_get_plantekemi" ] }, { "page": "ndb_get_schema", "title": "Get the database schema", "topics": [ "ndb_get_schema" ] }, { "page": "ndb_get_skov_struktur", "title": "Get the skov struktur table", "topics": [ "ndb_get_skov_struktur" ] }, { "page": "ndb_get_skov_trae_diam_naturtype", "title": "Get the trae diameter per naturtype table", "topics": [ "ndb_get_skov_trae_diam_naturtype" ] }, { "page": "ndb_get_skov_traeregistrering", "title": "Get the skov traeregistrering table", "topics": [ "ndb_get_skov_traeregistrering" ] }, { "page": "ndb_get_stamdata", "title": "Get the stamdata table", "topics": [ "ndb_get_stamdata" ] }, { "page": "ndb_get_tbl", "title": "Get table from the database and filter", "topics": [ "ndb_get_tbl" ] }, { "page": "ndb_label", "title": "Given the variable name, return the label", "topics": [ "ndb_label" ] }, { "page": "ndb_labels", "title": "Naturdata_kalo labels", "topics": [ "ndb_labels" ] }, { "page": "ndb_names", "title": "Naturdata_kalo names", "topics": [ "ndb_names" ] }, { "page": "ndb_rename", "title": "Rename either a data.frame or vector", "topics": [ "ndb_rename" ] }, { "page": "ndb_to_percent", "title": "Convert from m^{2} cover to percent", "topics": [ "ndb_to_percent" ] }, { "page": "ndb_update_import_job", "title": "Update the import.jobs table", "topics": [ "ndb_update_import_job" ] }, { "page": "ndb_write_artsliste", "title": "Write artsliste to database", "topics": [ "ndb_write_artsliste" ] }, { "page": "ndb_write_to_db", "title": "Write table to database", "topics": [ "ndb_write_to_db" ] }, { "page": "nogo_naturtyper", "title": "No-go naturtyper", "topics": [ "nogo_naturtyper" ] }, { "page": "replace_na_if", "title": "Replace NA values based on a set of conditions", "topics": [ "replace_na_if" ] } ], "_readme": "https://gitlab.au.dk/ecos/tools/r-pkgs/naturdata/raw/HEAD/README.md", "_rundeps": [ "bit", "bit64", "blob", "cachem", "cli", "cpp11", "DBI", "dbplyr", 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